Querying CSV data with Datalog
Querying CSV data
I’ve been wanting to try out Datomic’s datalog for a while (not just for Datomic, but as a stand-alone query engine), but never got around to it. But some weeks ago I stumbled on two different links, that brought this idea back.
TextQL – execute SQL against structured text like CSV
On Hacker News I found a command line tool TextQL to do SQL querying against text data. It works by importing the structured text into a sqlite database.
Of course, if simply filtering for some text string is enough,
grep would probably work just fine, but for any type of relational query, such as join etc, you get that extra boost with a query engine.
Using core.logic to query custom data sources
While browsing around the internet in search for interesting things in Clojure I found Timothy Baldridge (@timbaldridge) YouTube video on using Core.Logic With Custom Data Sources. Here, core.logic is used to create relational queries over CSV data. Code from the video.
By the way, if you haven’t seen his other YouTube videos on the Core Async Go Macro Internals and Let’s Write a JIT, you should definitely check those out!
Datomic is to the database world what persistent collections are to data structures, favoring immutability over in-place mutation. Datomic comes with a query engine which is based on Datalog. Perhaps surprising, is that the query engine isn’t tied tighly to the database, but can be used against the ordinary data structures in Clojure.
Trying a query
To start off, we add Datomic and a CSV parser to our project.
:dependencies [[org.clojure/clojure "1.5.1"] [com.datomic/datomic-free "0.9.4470"] [clojure-csv/clojure-csv "2.0.1"]
Now we’re ready to start querying:
(ns datalog-query.core (:use [datomic.api :only (db q) :as d]) (:require [clojure-csv.core :as csv])) (let [[header & body] (csv/parse-csv (slurp "dataset.csv")) csv-data (into  (filter #(= (count %) (count header)) body))] (q '[:find ?first ?last ?comp :in [[?first ?last ?comp ?address ?city ?county ?state]] :where [(= ?state "CA")]] csv-data))
I’m filtering all the lines in the CSV data, to ensure that the rows all have the same number of columns.
That’s all to get started. To explore datalog further, have a look at the examples in this gist, or read the Datomic query documentation.
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